Steinegger M., Mirdita M. and Söding J., Protein-level assembly increases protein sequence recovery from metagenomic samples manyfold Nature Methods, doi: 10.1038/s41592-019-0437-4 2019.
We clustered sequences that could be aligned to a longer sequence with 90% of their residues and a sequence identity of 30% using Linclust/MMseqs2 --cov-mode 1 --min-seq-id 0.3.
>RifCSPlowO2_12_1023861.scaffolds.fasta_scaffold367679_1 # 24 # 428 # -1 # ID=367679_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc_cont=0.435
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